FastQCFastQC Report
Tue 28 Jun 2022
EGAF00004953187

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004953187
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47460482
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTT2039070.4296353332441925No Hit
ACTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCT951200.20041937205778904No Hit
AACTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTC858830.18095686428131935No Hit
GAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACTTCGGGAA776020.16350866390273913No Hit
AAGGAGTCTGACATGTGTGCGAGTCAACGGGCGATCAAACCCGTAAGGCG682100.1437195686297497No Hit
GTTAGTTTTACCCTACTGATGACAGCGTCGCAATAGTAATTCAACCTAGT675040.14223201525850496No Hit
AAACTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTT674350.142086631147151No Hit
GAAACTTACGAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCC614690.12951617305530105No Hit
CCCTCGCGGTACTTGTTTGCTATCGGTCTCTCGCCCGTATTTAGCCTTGG578210.12182977829850106No Hit
GGCGATCAAACCCGTAAGGCGCAAGGAAGCTGACTGGCGGGATCCCCCTG559860.1179634037429287No Hit
AGGAGTCTGACATGTGTGCGAGTCAACGGGCGATCAAACCCGTAAGGCGC555460.11703631665603395No Hit
GGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAA551290.11615769093959055No Hit
GGAGTCTGACATGTGTGCGAGTCAACGGGCGATCAAACCCGTAAGGCGCA532090.11211222001495896No Hit
GGCGGGGTTACCCGCTGAATTTAAGCATATCAATAAGCGGAGGAAAAGAA531360.11195840783917871No Hit
CAAACCCGTAAGGCGCAAGGAAGCTGACTGGCGGGATCCCCCTGGGGGTT516000.10872203109947345No Hit
GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC515880.10869674690619449No Hit
AGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAA503830.10615779249776688No Hit
CAACCTAGTACGAGAGGAACCGTTGATTCGCACAATTGGTCATCGCGCTT490880.10342920663974715No Hit
TTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTTG478180.1007532961843919No Hit
ATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAATTGGTCATCGCG476260.10034874909192874No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)