FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004953470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004953470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9413495
Sequences flagged as poor quality0
Sequence length21
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATGGAATGGAATGGAATGGC296390.3148564906020559No Hit
AGGGGAATGGAATGGAATGGC291790.3099698889732241No Hit
AATGGAATGGAATGGAATGGG186490.19810920386105266No Hit
AGGGGAATGGAATGGAATGGG184590.19609082492740476No Hit
GCAGCGTAAACCGGGGGGGGT163510.17369744181093208No Hit
AGGCTCCGGGCCGGGGGGGGT131860.14007549799516544No Hit
GGGGGGGGGGGGGGGGGGGGG129440.13750472061651917No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)