FastQCFastQC Report
Thu 16 Jun 2022
EGAF00004953533

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004953533
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48668047
Sequences flagged as poor quality0
Sequence length62
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGGGAGACAGTGATAATGAAAGCTAAGCCTCGGGCTAATTTCCCCATAGCCGTGGGGTG1334210.27414496414865386No Hit
GTGAATGGGAGCGCCCGAATCTGGCTTGGCGGAATATCTCTTTGACAAGCACACCCTGGGAG784500.1611940581877058No Hit
GCCTTAGCCCTGTGCCCCCTGAAACAGCTGCCACCATCACTCGCAAGAGAATCCCCTCCATC739490.15194569036230282No Hit
GCCCTGAGATCACCTAAAAAGCTGCTACCAAGACAGCCACGAAGATCCTACCAAAATGAAGC622830.12797513736271357No Hit
GTGATAATGAAAGCTAAGCCTCGGGCTAATTTCCCCATAGCCGTGGGGTGACTTCCCTGGTC539680.11089000551018618No Hit
GTATCAACGCAGAGTGAATGGGAGCGCCCGAATCTGGCTTGGCGGAATATCTCTTTGACAAG522980.10745859598598644No Hit
GATACAAACTGGACTCTCAGGACAAAACGACACCAGCCAAACCAGCAGCCCCTCAGCATCCA505380.1038422602000035No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAACT487320.10013140654688692No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)