FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004954998

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004954998
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1844752
Sequences flagged as poor quality0
Sequence length30
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGAAAAAGGGGGGGGGGGGGAAAAA472542.56153672688795No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGG294541.5966373799838678No Hit
GGGGGGGAAAAAAGGGGGGGGGGGGAAAAA122870.6660515885062057No Hit
GGTGGGGAAAAAGGGGGGGGGGGGGAAAAA73750.3997827350234611No Hit
GGGGGGGAAAGAGGGGGGGGGGGGGAAAAA48250.26155277240517966No Hit
GGGGGGGAAAAAGGGGGGTGGGGGGAAAAA47750.2588423809812918No Hit
GGGGGGGAGAAAGGGGGGGGGGGGGAAAAA42590.23087114148676893No Hit
GGGGGGGAAAAAGGAGGGGGGGGGGAAAAA38540.20891697095327721No Hit
GGGGGGGAAAAAAAAGGGGGGGGGGAAAAA36120.19579867646165988No Hit
GGGGGGGAAAAAAGAGGGGGGGGGGAAAAA35400.19189571281126136No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGAAA24210.13123715274465078No Hit
GGGGGGGAAAAAGGGGGGGGGGGGAAAAAA23960.12988195703270686No Hit
GGGGGGGAAAAAAAGGGGGGGGGGGAAAAA22060.11958246962193292No Hit
GGGGGGGAAAAGGGGGGGGGGGGGGAAAAA21330.11562529814305664No Hit
GGTGGGGAAAAAAGGGGGGGGGGGGAAAAA21180.11481218071589026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)