FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004955011

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955011
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4089966
Sequences flagged as poor quality0
Sequence length36
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1209412.957017246598138No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT394220.9638710933049321No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTT105950.2590486082280391No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGT49440.12088120047941718No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTG48690.11904744440418333No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)