FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004955022

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955022
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2763496
Sequences flagged as poor quality0
Sequence length36
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1480495.357308279078385No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTATA423071.5309231495178572Illumina Single End PCR Primer 1 (97% over 36bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTG131500.4758465364161917No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT74940.27117824668463425No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTT70060.25351945506706No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG61480.22247182554271833No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTT38850.1405827980210574No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)