FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004955149

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955149
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1963477
Sequences flagged as poor quality0
Sequence length38
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1098335.593801200625218No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGG35830.18248240239126814No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGG31210.158952715005065No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGG25270.12870025979423236No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT24820.12640840712674503No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTG24380.12416748451853524No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)