FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004955154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1247626
Sequences flagged as poor quality0
Sequence length42
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAAGCACAA103250.827571724218636TruSeq Adapter, Index 3 (97% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)