FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences574432
Sequences flagged as poor quality0
Sequence length36
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG429667.479736504930087No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT237414.132952203219877No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTT68371.190219207843574No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGT31780.553242159211186No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTG23380.4070107514901677No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGTT17720.30847863628767197No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGT16220.28236588490891873No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGT12030.20942426605760123No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGAAAAAGGGGTT11600.20193861066235863No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGAGAGGGGGGGT10780.18766363990864018No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGAGAGGGGGGTT9880.17199598908138822No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGTT9220.16050637847473678No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGG8680.15110578797838561No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGG8660.15075761796000223No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGTT8590.14953902289566043No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGAAGGGGGGT8500.14797225781293522No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGT8390.14605732271182664No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGT7620.13265277700406664No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGT6990.12168542142499027No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGAAGGGGGTT6920.12046682636064844No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGT6500.11315525597459751No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGT6130.10671411063450503No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGT6100.10619185560692998No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGAAAAGGGGGTT6090.10601777059773829No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGAGAGGGGGT5990.1042769205058214No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGAGAGGGGTT5970.10392875048743802No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)