FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19004
Sequences flagged as poor quality0
Sequence length151-2010
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGCCAAACCCAACAACCTAGATAGGCTTAA1911.0050515680909282No Hit
GTTACGTATTGCTGGTGCTGCCAAACCCAACAACCTAGATAGGCTTAACC950.49989475899810565No Hit
AGTTACGTATTGCTGGTGCTGCCAAACCCAACAACCTAGATAGGCTTAAC510.268364554830562No Hit
CCAGTTACGTATTGCTGGTGCTGCCAAACCCAACAACCTAGATAGGCTTA430.22626815407282677No Hit
TGGTTACGTATTGCTGGTGCTGCCAAACCCAACAACCTAGATAGGCTTAA390.20521995369395915No Hit
CAGTTACGTATTGCTGGTGCCAAACCCAACAACCTAGATAGGCTTAACCT360.18943380340980845No Hit
GGTTACGTATTGCTGGTGCTGCCAAACCCAACAACCTAGATAGGCTTAAC310.16312355293622396No Hit
GCGTTACGTATTGCTGGTGCTGCCAAACCCAACAACCTAGATAGGCTTAA310.16312355293622396No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)