FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955674

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955674
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26278
Sequences flagged as poor quality0
Sequence length150-1912
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGTTGCGTCCTGTTACGAGAACTCATTTAA3081.1720831113478956No Hit
GTTACGTATTGCTGGTGCTGTTGCGTCCTGTTACGAGAACTCATTTAACC1520.578430626379481No Hit
CCAGTTACGTATTGCTGGTGCTGTTGCGTCCTGTTACGAGAACTCATTTA860.3272699596620748No Hit
GCGTTACGTATTGCTGGTGCTGTTGCGTCCTGTTACGAGAACTCATTTAA730.2777989192480402No Hit
AGTTACGTATTGCTGGTGCTGTTGCGTCCTGTTACGAGAACTCATTTAAC540.20549509095060506No Hit
TGGTTACGTATTGCTGGTGCTGTTGCGTCCTGTTACGAGAACTCATTTAA520.1978841616561382No Hit
TTTACGTATTGCTGGTGCTGTTGCGTCCTGTTACGAGAACTCATTTAACC420.15982951518380392No Hit
GGTTACGTATTGCTGGTGCTGTTGCGTCCTGTTACGAGAACTCATTTAAC310.11796940406423626No Hit
GCCATGTATTGCTGGTGCTGTTGCGTCCTGTTACGAGAACTCATTTAACC310.11796940406423626No Hit
TGCCATGTATTGCTGGTGCTGTTGCGTCCTGTTACGAGAACTCATTTAAC270.10274754547530253No Hit
TAAGTTACGTATTGCTGGTGCTGTTGCGTCCTGTTACGAGAACTCATTTA270.10274754547530253No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)