FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45442
Sequences flagged as poor quality0
Sequence length150-2110
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGCTGAACGGTCATAGAGTCCACCATTTAA9112.0047533119140883No Hit
GTTACGTATTGCTGGTGCTGCTGAACGGTCATAGAGTCCACCATTTAACC3380.7438052902601118No Hit
CCAGTTACGTATTGCTGGTGCTGCTGAACGGTCATAGAGTCCACCATTTA3030.6667840323929405No Hit
GCGTTACGTATTGCTGGTGCTGCTGAACGGTCATAGAGTCCACCATTTAA2440.5369481977025659No Hit
AGTTACGTATTGCTGGTGCTGCTGAACGGTCATAGAGTCCACCATTTAAC1790.39390871880639056No Hit
CAGTTACGTATTGCTGGTGCTGAACGGTCATAGAGTCCACCATTTAACCT1540.3388935346155539No Hit
TGGTTACGTATTGCTGGTGCTGCTGAACGGTCATAGAGTCCACCATTTAA1400.3080850314686853No Hit
GGTTACGTATTGCTGGTGCTGCTGAACGGTCATAGAGTCCACCATTTAAC970.21345891466044625No Hit
CGTTACGTATTGCTGGTGCTGCTGAACGGTCATAGAGTCCACCATTTAAC930.2046564851899124No Hit
TTTACGTATTGCTGGTGCTGCTGAACGGTCATAGAGTCCACCATTTAACC900.19805466308701203No Hit
CGGTTACGTATTGCTGGTGCTGCTGAACGGTCATAGAGTCCACCATTTAA890.19585405571937853No Hit
AGGTTACGTATTGCTGGTGCTGCTGAACGGTCATAGAGTCCACCATTTAA830.18265041151357775No Hit
TAAGTTACGTATTGCTGGTGCTGCTGAACGGTCATAGAGTCCACCATTTA750.16504555257251No Hit
AAAGTTACGTATTGCTGGTGCTGCTGAACGGTCATAGAGTCCACCATTTA720.15844373046960963No Hit
TGCCATGTATTGCTGGTGCTGCTGAACGGTCATAGAGTCCACCATTTAAC650.14303947889617535No Hit
CCAGTTACGTATTGCTGGTGCTGAACGGTCATAGAGTCCACCATTTAACC490.10782976101403986No Hit
TGCCACGTATTGCTGGTGCTGCTGAACGGTCATAGAGTCCACCATTTAAC460.10122793891113949No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)