FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004955679

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955679
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9823
Sequences flagged as poor quality0
Sequence length150-2975
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGAGATTCAGACCGTCTCATGCAAAGTTAA1081.0994604499643692No Hit
GTTACGTATTGCTGGTGCTGAGATTCAGACCGTCTCATGCAAAGTTAACC620.6311717397943601No Hit
GCGTTACGTATTGCTGGTGCTGAGATTCAGACCGTCTCATGCAAAGTTAA270.2748651124910923No Hit
AGTTACGTATTGCTGGTGCTGAGATTCAGACCGTCTCATGCAAAGTTAAC240.24432454443652651No Hit
CCAGTTACGTATTGCTGGTGCTGAGATTCAGACCGTCTCATGCAAAGTTA220.22396416573348266No Hit
CAGTTACGTATTGCTGGTGCTGAGATTCAGACCGTCTCATGCAAGTTAAC200.20360378703043877No Hit
TGGTTACGTATTGCTGGTGCTGAGATTCAGACCGTCTCATGCAAAGTTAA160.16288302962435103No Hit
GGTTACGTATTGCTGGTGCTGAGATTCAGACCGTCTCATGCAAAGTTAAC150.15270284027282907No Hit
TTTACGTATTGCTGGTGCTGAGATTCAGACCGTCTCATGCAAAGTTAACC140.14252265092130714No Hit
TGCCACGTATTGCTGGTGCTGAGATTCAGACCGTCTCATGCAAAGTTAAC120.12216227221826326No Hit
GTTACGTATTGCTGGTGCTGAGATTCAGACCGTCTCATGCAAGTTAACCT110.11198208286674133No Hit
GCCAGACCGTCTCATGCAAAGTTAACCTACTTGCCTGTCGCTCTATCTTC100.10180189351521939No Hit
CAGTTACGTATTGCTGGTGCTGATTCAGACCGTCTCATGCAAAGTTAACC100.10180189351521939No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)