FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004955680

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955680
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9832
Sequences flagged as poor quality0
Sequence length151-4381
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTACGTATTGCTGGTGCTGCATACAGCGACTACGCATTCTCATTTAACC1171.1899918633034987No Hit
CAGTTACGTATTGCTGGTGCTGCATACAGCGACTACGCATTCTCATTTAA750.7628152969894223No Hit
TTTACGTATTGCTGGTGCTGCATACAGCGACTACGCATTCTCATTTAACC510.5187144019528072No Hit
AGTTACGTATTGCTGGTGCTGCATACAGCGACTACGCATTCTCATTTAAC510.5187144019528072No Hit
TGCCATGTATTGCTGGTGCTGCATACAGCGACTACGCATTCTCATTTAAC320.32546786004882017No Hit
GCCATGTATTGCTGGTGCTGCATACAGCGACTACGCATTCTCATTTAACC310.31529698942229456No Hit
TGGTTACGTATTGCTGGTGCTGCATACAGCGACTACGCATTCTCATTTAA260.26444263628966636No Hit
GCGTTACGTATTGCTGGTGCTGCATACAGCGACTACGCATTCTCATTTAA260.26444263628966636No Hit
AGGTTACGTATTGCTGGTGCTGCATACAGCGACTACGCATTCTCATTTAA170.17290480065093572No Hit
GGTTACGTATTGCTGGTGCTGCATACAGCGACTACGCATTCTCATTTAAC170.17290480065093572No Hit
CGTTACGTATTGCTGGTGCTGCATACAGCGACTACGCATTCTCATTTAAC170.17290480065093572No Hit
TGCCACGTATTGCTGGTGCTGCATACAGCGACTACGCATTCTCATTTAAC150.15256305939788448No Hit
CCAGTTACGTATTGCTGGTGCTGCATACAGCGACTACGCATTCTCATTTA150.15256305939788448No Hit
CTTTACGTATTGCTGGTGCTGCATACAGCGACTACGCATTCTCATTTAAC140.14239218877135884No Hit
GCACGTATTGCTGGTGCTGCATACAGCGACTACGCATTCTCATTTAACCT130.13222131814483318No Hit
TTTTACGTATTGCTGGTGCTGCATACAGCGACTACGCATTCTCATTTAAC110.11187957689178193No Hit
GTTGCGTATTGCTGGTGCTGCATACAGCGACTACGCATTCTCATTTAACC110.11187957689178193No Hit
TGCGTATTGCTGGTGCTGCATACAGCGACTACGCATTCTCATTTAACCTA110.11187957689178193No Hit
GACATGTATTGCTGGTGCTGCATACAGCGACTACGCATTCTCATTTAACC100.10170870626525631No Hit
GTTACGTATTGCTGGTGCTGCATACAGCGACTACGCATTCATTTAACCTT100.10170870626525631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)