FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004955683

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955683
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61905
Sequences flagged as poor quality0
Sequence length150-2574
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGTACAGTCCGAGCCTCATGTGATCTTTAA9751.5749939423309909No Hit
GTTACGTATTGCTGGTGCTGTACAGTCCGAGCCTCATGTGATCTTTAACC5220.8432275260479768No Hit
GCGTTACGTATTGCTGGTGCTGTACAGTCCGAGCCTCATGTGATCTTTAA2340.37799854615943784No Hit
AGTTACGTATTGCTGGTGCTGTACAGTCCGAGCCTCATGTGATCTTTAAC2170.3505371133187949No Hit
CCAGTTACGTATTGCTGGTGCTGTACAGTCCGAGCCTCATGTGATCTTTA2140.34569097811162264No Hit
TTTACGTATTGCTGGTGCTGTACAGTCCGAGCCTCATGTGATCTTTAACC1640.2649220579920846No Hit
TGGTTACGTATTGCTGGTGCTGTACAGTCCGAGCCTCATGTGATCTTTAA1480.2390760035538325No Hit
GGTTACGTATTGCTGGTGCTGTACAGTCCGAGCCTCATGTGATCTTTAAC1260.2035376787012358No Hit
TGCCACGTATTGCTGGTGCTGTACAGTCCGAGCCTCATGTGATCTTTAAC920.14861481301994992No Hit
AAAGTTACGTATTGCTGGTGCTGTACAGTCCGAGCCTCATGTGATCTTTA850.1373071642032146No Hit
CGTTACGTATTGCTGGTGCTGTACAGTCCGAGCCTCATGTGATCTTTAAC820.1324610289960423No Hit
AGGTTACGTATTGCTGGTGCTGTACAGTCCGAGCCTCATGTGATCTTTAA770.12438413698408853No Hit
TGCCATGTATTGCTGGTGCTGTACAGTCCGAGCCTCATGTGATCTTTAAC710.11469186656974396No Hit
CAGTTACGTATTGCTGGTGCTGTACAGTCCGAGCCTCATGATCTTTAACC700.11307648816735319No Hit
CGGTTACGTATTGCTGGTGCTGTACAGTCCGAGCCTCATGTGATCTTTAA670.10823035296018092No Hit
TAAGTTACGTATTGCTGGTGCTGTACAGTCCGAGCCTCATGTGATCTTTA670.10823035296018092No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)