FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955684

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955684
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30717
Sequences flagged as poor quality0
Sequence length150-1967
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGGACAGACACCGTTCATCGACTTTCTTAA4991.6245076016538074No Hit
GTTACGTATTGCTGGTGCTGGACAGACACCGTTCATCGACTTTCTTAACC3421.1133899794901847No Hit
GCGTTACGTATTGCTGGTGCTGGACAGACACCGTTCATCGACTTTCTTAA2220.7227268287918742No Hit
AGTTACGTATTGCTGGTGCTGGACAGACACCGTTCATCGACTTTCTTAAC1440.46879578083797246No Hit
CCAGTTACGTATTGCTGGTGCTGGACAGACACCGTTCATCGACTTTCTTA1220.3971742032099489No Hit
TTTACGTATTGCTGGTGCTGGACAGACACCGTTCATCGACTTTCTTAACC1050.3418302568610216No Hit
TGGTTACGTATTGCTGGTGCTGGACAGACACCGTTCATCGACTTTCTTAA1030.33531920434938306No Hit
AGGTTACGTATTGCTGGTGCTGGACAGACACCGTTCATCGACTTTCTTAA870.283230784256275No Hit
CGTTACGTATTGCTGGTGCTGGACAGACACCGTTCATCGACTTTCTTAAC870.283230784256275No Hit
GGTTACGTATTGCTGGTGCTGGACAGACACCGTTCATCGACTTTCTTAAC810.2636976267213595No Hit
TAAGTTACGTATTGCTGGTGCTGGACAGACACCGTTCATCGACTTTCTTA540.17579841781423966No Hit
CGGTTACGTATTGCTGGTGCTGGACAGACACCGTTCATCGACTTTCTTAA540.17579841781423966No Hit
AAAGTTACGTATTGCTGGTGCTGGACAGACACCGTTCATCGACTTTCTTA490.1595207865351434No Hit
CAAGTTACGTATTGCTGGTGCTGGACAGACACCGTTCATCGACTTTCTTA410.13347657648858938No Hit
TGCCATGTATTGCTGGTGCTGGACAGACACCGTTCATCGACTTTCTTAAC390.12696552397695088No Hit
GCCATGTATTGCTGGTGCTGGACAGACACCGTTCATCGACTTTCTTAACC370.12045447146531237No Hit
CAGTTACGTATTGCTGGTGCTGGACAGACACCGTTCATCGACTTCTTAAC360.11719894520949312No Hit
ATAGTTACGTATTGCTGGTGCTGGACAGACACCGTTCATCGACTTTCTTA350.11394341895367387No Hit
TGCCACGTATTGCTGGTGCTGGACAGACACCGTTCATCGACTTTCTTAAC340.11068789269785462No Hit
TCACGTATTGCTGGTGCTGGACAGACACCGTTCATCGACTTTCTTAACCT320.10417684018621609No Hit
TGTTACGTATTGCTGGTGCTGGACAGACACCGTTCATCGACTTTCTTAAC320.10417684018621609No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)