FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004955685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7063
Sequences flagged as poor quality0
Sequence length170-1909
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTACGTATTGCTGGTGCTGCTAGACACCTTGGGTTGACAGACCTTAACC510.7220727736089481No Hit
CAGTTACGTATTGCTGGTGCTGCTAGACACCTTGGGTTGACAGACCTTAA480.6795979045731275No Hit
TTTACGTATTGCTGGTGCTGCTAGACACCTTGGGTTGACAGACCTTAACC340.481381849072632No Hit
AGTTACGTATTGCTGGTGCTGCTAGACACCTTGGGTTGACAGACCTTAAC310.43890698003681156No Hit
TGCCATGTATTGCTGGTGCTGCTAGACACCTTGGGTTGACAGACCTTAAC190.2690075038935297No Hit
CCAGTTACGTATTGCTGGTGCTGCTAGACACCTTGGGTTGACAGACCTTA180.25484921421492285No Hit
GCGTTACGTATTGCTGGTGCTGCTAGACACCTTGGGTTGACAGACCTTAA120.16989947614328188No Hit
GCCATGTATTGCTGGTGCTGCTAGACACCTTGGGTTGACAGACCTTAACC120.16989947614328188No Hit
TGGTTACGTATTGCTGGTGCTGCTAGACACCTTGGGTTGACAGACCTTAA110.15574118646467508No Hit
CTTTACGTATTGCTGGTGCTGCTAGACACCTTGGGTTGACAGACCTTAAC80.1132663174288546No Hit
GGTTACGTATTGCTGGTGCTGCTAGACACCTTGGGTTGACAGACCTTAAC80.1132663174288546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)