FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004955690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14062
Sequences flagged as poor quality0
Sequence length152-2066
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGGTTGAATGAGCCTACTGGGTCCTCTTAA1841.3084909685677713No Hit
GTTACGTATTGCTGGTGCTGGTTGAATGAGCCTACTGGGTCCTCTTAACC970.6898023040819229No Hit
CCAGTTACGTATTGCTGGTGCTGGTTGAATGAGCCTACTGGGTCCTCTTA560.39823638173801734No Hit
GCGTTACGTATTGCTGGTGCTGGTTGAATGAGCCTACTGGGTCCTCTTAA480.34134547006115773No Hit
AGTTACGTATTGCTGGTGCTGGTTGAATGAGCCTACTGGGTCCTCTTAAC370.26312046650547577No Hit
CGTTACGTATTGCTGGTGCTGGTTGAATGAGCCTACTGGGTCCTCTTAAC260.18489546294979378No Hit
TGGTTACGTATTGCTGGTGCTGGTTGAATGAGCCTACTGGGTCCTCTTAA260.18489546294979378No Hit
GGTTACGTATTGCTGGTGCTGGTTGAATGAGCCTACTGGGTCCTCTTAAC220.15645000711136398No Hit
TTTACGTATTGCTGGTGCTGGTTGAATGAGCCTACTGGGTCCTCTTAACC190.1351159152325416No Hit
AAAGTTACGTATTGCTGGTGCTGGTTGAATGAGCCTACTGGGTCCTCTTA190.1351159152325416No Hit
CAGTTACGTATTGCTGGTGCTGGTTGAATGAGCCTACTGGGTCTCTTAAC180.12800455127293414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)