FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004955695

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955695
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78389
Sequences flagged as poor quality0
Sequence length150-2090
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCTATTAAC6180.788375920090829No Hit
CAGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCCTATTAA5010.6391202847338274No Hit
GTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCTATTAACCT3090.3941879600454145No Hit
GTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCCTATTAACC2540.32402505453571295No Hit
GCGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCTATTAAC1960.2500350814527548No Hit
CCAGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCTATTAA1840.23472681115972904No Hit
CCAGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCCTATTA1610.20538595976476293No Hit
CAGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCTATTAACC1450.18497493270739515No Hit
GCGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCCTATTAA1450.18497493270739515No Hit
AGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCTATTAACC1440.1836992435163097No Hit
TGGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCTATTAAC1020.13012029749071935No Hit
AGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCCTATTAAC890.11353633800660808No Hit
TTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCTATTAACCT880.11226064881552258No Hit
TGGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCCTATTAA880.11226064881552258No Hit
TTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCCTATTAACC860.10970927043335163No Hit
CGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCTATTAACC860.10970927043335163No Hit
GGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCTATTAACC800.10205513528683871No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)