FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955696

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955696
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29846
Sequences flagged as poor quality0
Sequence length150-2364
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGATGGACTTTGGTAACTTCCTGCGTTTAA4381.4675333378007103No Hit
GTTACGTATTGCTGGTGCTGATGGACTTTGGTAACTTCCTGCGTTTAACC2570.8610869128191383No Hit
CCAGTTACGTATTGCTGGTGCTGATGGACTTTGGTAACTTCCTGCGTTTA1330.4456208537157408No Hit
AGTTACGTATTGCTGGTGCTGATGGACTTTGGTAACTTCCTGCGTTTAAC1230.4121155263686926No Hit
GCGTTACGTATTGCTGGTGCTGATGGACTTTGGTAACTTCCTGCGTTTAA1140.38196073175634926No Hit
TGGTTACGTATTGCTGGTGCTGATGGACTTTGGTAACTTCCTGCGTTTAA830.2780942169804999No Hit
TTTACGTATTGCTGGTGCTGATGGACTTTGGTAACTTCCTGCGTTTAACC760.25464048783756615No Hit
TGCCATGTATTGCTGGTGCTGATGGACTTTGGTAACTTCCTGCGTTTAAC600.20103196408228907No Hit
GCCATGTATTGCTGGTGCTGATGGACTTTGGTAACTTCCTGCGTTTAACC590.19768143134758429No Hit
CGTTACGTATTGCTGGTGCTGATGGACTTTGGTAACTTCCTGCGTTTAAC570.19098036587817463No Hit
GGTTACGTATTGCTGGTGCTGATGGACTTTGGTAACTTCCTGCGTTTAAC550.18427930040876497No Hit
CAGTTACGTATTGCTGGTGCTGATGGACTTTGGTAACTTCTGCGTTTAAC440.147423440327012No Hit
AAAGTTACGTATTGCTGGTGCTGATGGACTTTGGTAACTTCCTGCGTTTA400.13402130938819273No Hit
AGGTTACGTATTGCTGGTGCTGATGGACTTTGGTAACTTCCTGCGTTTAA380.12732024391878308No Hit
TGCCACGTATTGCTGGTGCTGATGGACTTTGGTAACTTCCTGCGTTTAAC370.12396971118407826No Hit
CGGTTACGTATTGCTGGTGCTGATGGACTTTGGTAACTTCCTGCGTTTAA360.12061917844937345No Hit
CAGTTACGTATTGCTGGTGCTGATGGACTTGGTAACTTCCTGCGTTTAAC330.110567580245259No Hit
TAAGTTACGTATTGCTGGTGCTGATGGACTTTGGTAACTTCCTGCGTTTA330.110567580245259No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)