FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004955700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16543
Sequences flagged as poor quality0
Sequence length150-2288
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGACAGCATCAATGTTTGGCTAGTTGTTAA2861.7288279030405609No Hit
GTTACGTATTGCTGGTGCTGACAGCATCAATGTTTGGCTAGTTGTTAACC1550.93695218521429No Hit
AGTTACGTATTGCTGGTGCTGACAGCATCAATGTTTGGCTAGTTGTTAAC730.44127425497189143No Hit
CCAGTTACGTATTGCTGGTGCTGACAGCATCAATGTTTGGCTAGTTGTTA600.36269116847004773No Hit
GCGTTACGTATTGCTGGTGCTGACAGCATCAATGTTTGGCTAGTTGTTAA520.31433234600737475No Hit
TGGTTACGTATTGCTGGTGCTGACAGCATCAATGTTTGGCTAGTTGTTAA460.27806322916036996No Hit
TTTACGTATTGCTGGTGCTGACAGCATCAATGTTTGGCTAGTTGTTAACC390.23574925950553102No Hit
GGTTACGTATTGCTGGTGCTGACAGCATCAATGTTTGGCTAGTTGTTAAC290.17530073142718977No Hit
TGCCATGTATTGCTGGTGCTGACAGCATCAATGTTTGGCTAGTTGTTAAC250.15112132019585323No Hit
TGTTACGTATTGCTGGTGCTGACAGCATCAATGTTTGGCTAGTTGTTAAC240.1450764673880191No Hit
CGTTACGTATTGCTGGTGCTGACAGCATCAATGTTTGGCTAGTTGTTAAC230.13903161458018498No Hit
AAAGTTACGTATTGCTGGTGCTGACAGCATCAATGTTTGGCTAGTTGTTA220.13298676177235083No Hit
TGCCACGTATTGCTGGTGCTGACAGCATCAATGTTTGGCTAGTTGTTAAC200.12089705615668257No Hit
AGGTTACGTATTGCTGGTGCTGACAGCATCAATGTTTGGCTAGTTGTTAA190.11485220334884845No Hit
TAAGTTACGTATTGCTGGTGCTGACAGCATCAATGTTTGGCTAGTTGTTA180.10880735054101431No Hit
CGGTTACGTATTGCTGGTGCTGACAGCATCAATGTTTGGCTAGTTGTTAA180.10880735054101431No Hit
TCACGTATTGCTGGTGCTGACAGCATCAATGTTTGGCTAGTTGTTAACCT170.1027624977331802No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)