FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955701

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955701
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23324
Sequences flagged as poor quality0
Sequence length150-4326
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGCTACGTGTAAGGCATACCTGCCAGTTAA2220.95180929514663No Hit
GTTACGTATTGCTGGTGCTGCTACGTGTAAGGCATACCTGCCAGTTAACC1270.5445035156919911No Hit
CCAGTTACGTATTGCTGGTGCTGCTACGTGTAAGGCATACCTGCCAGTTA540.23152117990053164No Hit
TTTACGTATTGCTGGTGCTGCTACGTGTAAGGCATACCTGCCAGTTAACC470.20150917509861088No Hit
TGGTTACGTATTGCTGGTGCTGCTACGTGTAAGGCATACCTGCCAGTTAA420.18007202881152462No Hit
AGTTACGTATTGCTGGTGCTGCTACGTGTAAGGCATACCTGCCAGTTAAC410.17578459955410736No Hit
GCGTTACGTATTGCTGGTGCTGCTACGTGTAAGGCATACCTGCCAGTTAA400.17149717029669012No Hit
AGGTTACGTATTGCTGGTGCTGCTACGTGTAAGGCATACCTGCCAGTTAA270.11576058995026582No Hit
CGTTACGTATTGCTGGTGCTGCTACGTGTAAGGCATACCTGCCAGTTAAC250.10718573143543132No Hit
TGCCACGTATTGCTGGTGCTGCTACGTGTAAGGCATACCTGCCAGTTAAC250.10718573143543132No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)