FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004955702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9666
Sequences flagged as poor quality0
Sequence length151-2247
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGCAGGTTACTCCTCCGTGAGTCTGATTAA1101.138009517897786No Hit
GTTACGTATTGCTGGTGCTGCAGGTTACTCCTCCGTGAGTCTGATTAACC490.5069315125181046No Hit
CCAGTTACGTATTGCTGGTGCTGCAGGTTACTCCTCCGTGAGTCTGATTA440.4552038071591144No Hit
GCGTTACGTATTGCTGGTGCTGCAGGTTACTCCTCCGTGAGTCTGATTAA370.38278501965652806No Hit
AGTTACGTATTGCTGGTGCTGCAGGTTACTCCTCCGTGAGTCTGATTAAC260.26898406786674944No Hit
TGGTTACGTATTGCTGGTGCTGCAGGTTACTCCTCCGTGAGTCTGATTAA240.2482929857231533No Hit
GGTTACGTATTGCTGGTGCTGCAGGTTACTCCTCCGTGAGTCTGATTAAC140.14483757500517278No Hit
AGGTTACGTATTGCTGGTGCTGCAGGTTACTCCTCCGTGAGTCTGATTAA140.14483757500517278No Hit
TGCCATGTATTGCTGGTGCTGCAGGTTACTCCTCCGTGAGTCTGATTAAC120.12414649286157665No Hit
CGGTTACGTATTGCTGGTGCTGCAGGTTACTCCTCCGTGAGTCTGATTAA120.12414649286157665No Hit
TTTACGTATTGCTGGTGCTGCAGGTTACTCCTCCGTGAGTCTGATTAACC120.12414649286157665No Hit
CGTTACGTATTGCTGGTGCTGCAGGTTACTCCTCCGTGAGTCTGATTAAC110.1138009517897786No Hit
AAAGTTACGTATTGCTGGTGCTGCAGGTTACTCCTCCGTGAGTCTGATTA110.1138009517897786No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)