FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004955705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77430
Sequences flagged as poor quality0
Sequence length150-2337
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGATGCTTGTTACATCAACCCTGGACTTAA7861.0151104223169314No Hit
GTTACGTATTGCTGGTGCTGATGCTTGTTACATCAACCCTGGACTTAACC6020.7774764303241638No Hit
GCGTTACGTATTGCTGGTGCTGATGCTTGTTACATCAACCCTGGACTTAA3030.3913211933359163No Hit
AGTTACGTATTGCTGGTGCTGATGCTTGTTACATCAACCCTGGACTTAAC2420.3125403590339662No Hit
CCAGTTACGTATTGCTGGTGCTGATGCTTGTTACATCAACCCTGGACTTA1980.2557148392096087No Hit
TTTACGTATTGCTGGTGCTGATGCTTGTTACATCAACCCTGGACTTAACC1890.24409143742735373No Hit
GGTTACGTATTGCTGGTGCTGATGCTTGTTACATCAACCCTGGACTTAAC1760.22730207929742993No Hit
TGGTTACGTATTGCTGGTGCTGATGCTTGTTACATCAACCCTGGACTTAA1570.20276378664600284No Hit
AAAGTTACGTATTGCTGGTGCTGATGCTTGTTACATCAACCCTGGACTTA1160.149812734082397No Hit
TGCCATGTATTGCTGGTGCTGATGCTTGTTACATCAACCCTGGACTTAAC1140.14722975590856258No Hit
AGGTTACGTATTGCTGGTGCTGATGCTTGTTACATCAACCCTGGACTTAA1100.1420637995608937No Hit
CGTTACGTATTGCTGGTGCTGATGCTTGTTACATCAACCCTGGACTTAAC1100.1420637995608937No Hit
CAGTTACGTATTGCTGGTGCTGATGCTTGTTACATCAACCTGGACTTAAC1050.13560635412630762No Hit
TGCCACGTATTGCTGGTGCTGATGCTTGTTACATCAACCCTGGACTTAAC910.11752550690946663No Hit
GTTACGTATTGCTGGTGCTGATGCTTGTTACATCAACCTGGACTTAACCT880.11365103964871497No Hit
TAAGTTACGTATTGCTGGTGCTGATGCTTGTTACATCAACCCTGGACTTA790.10202763786646002No Hit
CGGTTACGTATTGCTGGTGCTGATGCTTGTTACATCAACCCTGGACTTAA780.10073614877954282No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)