FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004955709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67773
Sequences flagged as poor quality0
Sequence length150-4608
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGTTCTCAGTCTTCCTCCAGACAAGGTTAA7911.1671314535286914No Hit
GTTACGTATTGCTGGTGCTGTTCTCAGTCTTCCTCCAGACAAGGTTAACC4730.6979180499608989No Hit
AGTTACGTATTGCTGGTGCTGTTCTCAGTCTTCCTCCAGACAAGGTTAAC2330.34379472651350834No Hit
GCGTTACGTATTGCTGGTGCTGTTCTCAGTCTTCCTCCAGACAAGGTTAA2140.3157599634072566No Hit
CCAGTTACGTATTGCTGGTGCTGTTCTCAGTCTTCCTCCAGACAAGGTTA1850.2729700618240302No Hit
TTTACGTATTGCTGGTGCTGTTCTCAGTCTTCCTCCAGACAAGGTTAACC1710.2523128679562658No Hit
TGGTTACGTATTGCTGGTGCTGTTCTCAGTCTTCCTCCAGACAAGGTTAA1490.21985156330692163No Hit
CAGTTACGTATTGCTGGTGCTGTTCTCAGTCTTCTCCAGACAAGGTTAAC1280.18886577250527495No Hit
CGTTACGTATTGCTGGTGCTGTTCTCAGTCTTCCTCCAGACAAGGTTAAC1020.15050241246514098No Hit
GGTTACGTATTGCTGGTGCTGTTCTCAGTCTTCCTCCAGACAAGGTTAAC1020.15050241246514098No Hit
AGGTTACGTATTGCTGGTGCTGTTCTCAGTCTTCCTCCAGACAAGGTTAA880.12984521859737652No Hit
GTTACGTATTGCTGGTGCTGTTCTCAGTCTTCTCCAGACAAGGTTAACCT800.11804110781579685No Hit
TGCCACGTATTGCTGGTGCTGTTCTCAGTCTTCCTCCAGACAAGGTTAAC750.11066353857730954No Hit
TGCCATGTATTGCTGGTGCTGTTCTCAGTCTTCCTCCAGACAAGGTTAAC750.11066353857730954No Hit
AAAGTTACGTATTGCTGGTGCTGTTCTCAGTCTTCCTCCAGACAAGGTTA730.10771251088191464No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)