FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955710

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955710
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51408
Sequences flagged as poor quality0
Sequence length150-2490
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGTTGTGAGTGGAAAGATACAGGACCTTAA4740.9220354808590103No Hit
GTTACGTATTGCTGGTGCTGTTGTGAGTGGAAAGATACAGGACCTTAACC2370.46101774042950516No Hit
CAGTTACGTATTGCTGGTGCTGTTGTGAGTGGAAGATACAGGACCTTAAC1860.3618113912231559No Hit
CCAGTTACGTATTGCTGGTGCTGTTGTGAGTGGAAAGATACAGGACCTTA1230.2392623716153128No Hit
AGTTACGTATTGCTGGTGCTGTTGTGAGTGGAAAGATACAGGACCTTAAC1140.22175536881419233No Hit
GTTACGTATTGCTGGTGCTGTTGTGAGTGGAAGATACAGGACCTTAACCT990.19257703081232494No Hit
GCGTTACGTATTGCTGGTGCTGTTGTGAGTGGAAAGATACAGGACCTTAA870.169234360410831No Hit
TGGTTACGTATTGCTGGTGCTGTTGTGAGTGGAAAGATACAGGACCTTAA830.1614534702769997No Hit
TTTACGTATTGCTGGTGCTGTTGTGAGTGGAAAGATACAGGACCTTAACC580.112822906940554No Hit
AGGTTACGTATTGCTGGTGCTGTTGTGAGTGGAAAGATACAGGACCTTAA520.10115157173980703No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)