FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23629
Sequences flagged as poor quality0
Sequence length150-2277
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGCATCTGGAACGTGGTACACCTGTATTAA4311.8240297938973293No Hit
GTTACGTATTGCTGGTGCTGCATCTGGAACGTGGTACACCTGTATTAACC2250.9522197299928055No Hit
CCAGTTACGTATTGCTGGTGCTGCATCTGGAACGTGGTACACCTGTATTA1100.4655296457742605No Hit
AGTTACGTATTGCTGGTGCTGCATCTGGAACGTGGTACACCTGTATTAAC990.4189766811968344No Hit
GCGTTACGTATTGCTGGTGCTGCATCTGGAACGTGGTACACCTGTATTAA940.3978162427525498No Hit
TGGTTACGTATTGCTGGTGCTGCATCTGGAACGTGGTACACCTGTATTAA820.3470311904862669No Hit
TTTACGTATTGCTGGTGCTGCATCTGGAACGTGGTACACCTGTATTAACC620.2623894367091286No Hit
GGTTACGTATTGCTGGTGCTGCATCTGGAACGTGGTACACCTGTATTAAC480.20314020906513183No Hit
AGGTTACGTATTGCTGGTGCTGCATCTGGAACGTGGTACACCTGTATTAA450.1904439459985611No Hit
TAAGTTACGTATTGCTGGTGCTGCATCTGGAACGTGGTACACCTGTATTA430.18197977062084728No Hit
CAGTTACGTATTGCTGGTGCTGCATCTGAACGTGGTACACCTGTATTAAC380.1608193321765627No Hit
CGGTTACGTATTGCTGGTGCTGCATCTGGAACGTGGTACACCTGTATTAA360.15235515679884887No Hit
GCCATGTATTGCTGGTGCTGCATCTGGAACGTGGTACACCTGTATTAACC340.14389098142113504No Hit
AAAGTTACGTATTGCTGGTGCTGCATCTGGAACGTGGTACACCTGTATTA320.13542680604342122No Hit
CGTTACGTATTGCTGGTGCTGCATCTGGAACGTGGTACACCTGTATTAAC310.1311947183545643No Hit
ATAGTTACGTATTGCTGGTGCTGCATCTGGAACGTGGTACACCTGTATTA240.10157010453256592No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)