FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004955712

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955712
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16712
Sequences flagged as poor quality0
Sequence length150-1957
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGGAGTCTTGTGTCCCAGTTACCAGGTTAA1350.8078027764480612No Hit
GTTACGTATTGCTGGTGCTGGAGTCTTGTGTCCCAGTTACCAGGTTAACC1120.6701771182383915No Hit
CAGTTACGTATTGCTGGTGCTGAGTCTTGTGTCCCAGTTACCAGGTTAAC470.28123504068932503No Hit
AGTTACGTATTGCTGGTGCTGGAGTCTTGTGTCCCAGTTACCAGGTTAAC390.23336524652943993No Hit
TTTACGTATTGCTGGTGCTGGAGTCTTGTGTCCCAGTTACCAGGTTAACC340.20344662517951173No Hit
GTTACGTATTGCTGGTGCTGAGTCTTGTGTCCCAGTTACCAGGTTAACCT300.17951172809956917No Hit
CCAGTTACGTATTGCTGGTGCTGGAGTCTTGTGTCCCAGTTACCAGGTTA260.1555768310196266No Hit
GCGTTACGTATTGCTGGTGCTGGAGTCTTGTGTCCCAGTTACCAGGTTAA260.1555768310196266No Hit
TAAGTTACGTATTGCTGGTGCTGGAGTCTTGTGTCCCAGTTACCAGGTTA240.14360938247965532No Hit
GGTTACGTATTGCTGGTGCTGGAGTCTTGTGTCCCAGTTACCAGGTTAAC200.11967448539971279No Hit
GCCATGTATTGCTGGTGCTGGAGTCTTGTGTCCCAGTTACCAGGTTAACC190.11369076112972715No Hit
TGGTTACGTATTGCTGGTGCTGGAGTCTTGTGTCCCAGTTACCAGGTTAA190.11369076112972715No Hit
CGTTACGTATTGCTGGTGCTGGAGTCTTGTGTCCCAGTTACCAGGTTAAC180.1077070368597415No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)