FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004955714

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955714
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81981
Sequences flagged as poor quality0
Sequence length150-2880
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGAAGAAACAGGATGACAGAACCCTCTTAA12331.5040070260182237No Hit
GTTACGTATTGCTGGTGCTGAAGAAACAGGATGACAGAACCCTCTTAACC6900.8416584330515607No Hit
CAGTTACGTATTGCTGGTGCTGAAGAAACAGGATGACAGAACCTCTTAAC4600.5611056220343739No Hit
AGTTACGTATTGCTGGTGCTGAAGAAACAGGATGACAGAACCCTCTTAAC3070.37447701296641905No Hit
GCGTTACGTATTGCTGGTGCTGAAGAAACAGGATGACAGAACCCTCTTAA2660.3244654249155292No Hit
GTTACGTATTGCTGGTGCTGAAGAAACAGGATGACAGAACCTCTTAACCT2530.3086080921189056No Hit
CCAGTTACGTATTGCTGGTGCTGAAGAAACAGGATGACAGAACCCTCTTA2350.28665178516973444No Hit
TGGTTACGTATTGCTGGTGCTGAAGAAACAGGATGACAGAACCCTCTTAA2280.2781132213561679No Hit
TTTACGTATTGCTGGTGCTGAAGAAACAGGATGACAGAACCCTCTTAACC2100.2561569144069967No Hit
GGTTACGTATTGCTGGTGCTGAAGAAACAGGATGACAGAACCCTCTTAAC1650.20126614703406884No Hit
CGTTACGTATTGCTGGTGCTGAAGAAACAGGATGACAGAACCCTCTTAAC1380.16833168661031214No Hit
AGGTTACGTATTGCTGGTGCTGAAGAAACAGGATGACAGAACCCTCTTAA1310.15979312279674557No Hit
AAAGTTACGTATTGCTGGTGCTGAAGAAACAGGATGACAGAACCCTCTTA1270.15491394347470755No Hit
TGCCATGTATTGCTGGTGCTGAAGAAACAGGATGACAGAACCCTCTTAAC1230.15003476415266953No Hit
TAAGTTACGTATTGCTGGTGCTGAAGAAACAGGATGACAGAACCCTCTTA1220.14881496932216No Hit
AGTTACGTATTGCTGGTGCTGAAGAAACAGGATGACAGAACCTCTTAACC1190.14515558483063148No Hit
GCGTTACGTATTGCTGGTGCTGAAGAAACAGGATGACAGAACCTCTTAAC1100.1341774313560459No Hit
CCAGTTACGTATTGCTGGTGCTGAAGAAACAGGATGACAGAACCTCTTAA1100.1341774313560459No Hit
TGCCACGTATTGCTGGTGCTGAAGAAACAGGATGACAGAACCCTCTTAAC900.10978153474585574No Hit
TGGTTACGTATTGCTGGTGCTGAAGAAACAGGATGACAGAACCTCTTAAC850.1036825605933082No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)