FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004955716

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955716
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9784
Sequences flagged as poor quality0
Sequence length151-2428
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGCAAGAGCTTTGACTAAGGAGCATGTTAA1531.5637775960752247No Hit
GTTACGTATTGCTGGTGCTGCAAGAGCTTTGACTAAGGAGCATGTTAACC640.6541291905151267No Hit
CCAGTTACGTATTGCTGGTGCTGCAAGAGCTTTGACTAAGGAGCATGTTA340.3475061324611611No Hit
AGTTACGTATTGCTGGTGCTGCAAGAGCTTTGACTAAGGAGCATGTTAAC310.31684382665576455No Hit
GCGTTACGTATTGCTGGTGCTGCAAGAGCTTTGACTAAGGAGCATGTTAA290.2964022894521668No Hit
TGGTTACGTATTGCTGGTGCTGCAAGAGCTTTGACTAAGGAGCATGTTAA280.2861815208503679No Hit
GGTTACGTATTGCTGGTGCTGCAAGAGCTTTGACTAAGGAGCATGTTAAC200.2044153720359771No Hit
AGGTTACGTATTGCTGGTGCTGCAAGAGCTTTGACTAAGGAGCATGTTAA150.15331152902698283No Hit
TTTACGTATTGCTGGTGCTGCAAGAGCTTTGACTAAGGAGCATGTTAACC150.15331152902698283No Hit
CGGTTACGTATTGCTGGTGCTGCAAGAGCTTTGACTAAGGAGCATGTTAA120.12264922322158626No Hit
TAAGTTACGTATTGCTGGTGCTGCAAGAGCTTTGACTAAGGAGCATGTTA120.12264922322158626No Hit
AAAGTTACGTATTGCTGGTGCTGCAAGAGCTTTGACTAAGGAGCATGTTA110.11242845461978741No Hit
CAGTTACGTATTGCTGGTGCTGCAGAGCTTTGACTAAGGAGCATGTTAAC110.11242845461978741No Hit
CAGTTACGTATTGCTGGTGCTGCAAGAGCTTTGACTAAGGGCATGTTAAC100.10220768601798855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)