FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18638
Sequences flagged as poor quality0
Sequence length150-2357
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGAAGCGTTGAAACCTTTGTCCTCTCTTAA1720.922845798905462No Hit
GTTACGTATTGCTGGTGCTGAAGCGTTGAAACCTTTGTCCTCTCTTAACC1510.8101727653181672No Hit
TTTACGTATTGCTGGTGCTGAAGCGTTGAAACCTTTGTCCTCTCTTAACC560.30046142289945277No Hit
AGTTACGTATTGCTGGTGCTGAAGCGTTGAAACCTTTGTCCTCTCTTAAC520.2789998926923489No Hit
CAGTTACGTATTGCTGGTGCTGAAGCGTTGAAACCTTTGTCCTCTTAACC490.26290374503702113No Hit
CAGTTACGTATTGCTGGTGCTGAAGCGTTGAAACCTTGTCCTCTCTTAAC410.21998068462281362No Hit
CCAGTTACGTATTGCTGGTGCTGAAGCGTTGAAACCTTTGTCCTCTCTTA370.19851915441570986No Hit
GCGTTACGTATTGCTGGTGCTGAAGCGTTGAAACCTTTGTCCTCTCTTAA340.182423006760382No Hit
GTTACGTATTGCTGGTGCTGAAGCGTTGAAACCTTTGTCCTCTTAACCTT340.182423006760382No Hit
GTTACGTATTGCTGGTGCTGAAGCGTTGAAACCTTGTCCTCTCTTAACCT320.17169224165683014No Hit
TGCCATGTATTGCTGGTGCTGAAGCGTTGAAACCTTTGTCCTCTCTTAAC310.16632685910505418No Hit
TGGTTACGTATTGCTGGTGCTGAAGCGTTGAAACCTTTGTCCTCTCTTAA270.14486532889795042No Hit
AGTTACGTATTGCTGGTGCTGAAGCGTTGAAACCTTTGTCCTCTTAACCT240.1287691812426226No Hit
GCCATGTATTGCTGGTGCTGAAGCGTTGAAACCTTTGTCCTCTCTTAACC240.1287691812426226No Hit
GGTTACGTATTGCTGGTGCTGAAGCGTTGAAACCTTTGTCCTCTCTTAAC230.12340379869084665No Hit
AGGTTACGTATTGCTGGTGCTGAAGCGTTGAAACCTTTGTCCTCTCTTAA220.11803841613907072No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)