FastQCFastQC Report
Wed 8 May 2024
EGAF00004955718

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955718
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35756
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length150-2138
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGTCTTCTACTACCGATCCGAAGCAGTTAA2610.729947421411791No Hit
GTTACGTATTGCTGGTGCTGTCTTCTACTACCGATCCGAAGCAGTTAACC1370.383152477905806No Hit
GCGTTACGTATTGCTGGTGCTGTCTTCTACTACCGATCCGAAGCAGTTAA930.26009620762948876No Hit
CCAGTTACGTATTGCTGGTGCTGTCTTCTACTACCGATCCGAAGCAGTTA810.22653540664503857No Hit
AGTTACGTATTGCTGGTGCTGTCTTCTACTACCGATCCGAAGCAGTTAAC520.14543013759928405No Hit
CAGTTACGTATTGCTGGTGCTGTCTTCTACCGATCCGAAGCAGTTAACCT440.12305627027631727No Hit
CAGTTACGTATTGCTGGTGCTGTCTTTACTACCGATCCGAAGCAGTTAAC440.12305627027631727No Hit
AAAGTTACGTATTGCTGGTGCTGTCTTCTACTACCGATCCGAAGCAGTTA410.11466607003020471No Hit
CAGTTACGTATTGCTGGTGCTGTCTTCACTACCGATCCGAAGCAGTTAAC400.11186933661483386No Hit
TAAGTTACGTATTGCTGGTGCTGTCTTCTACTACCGATCCGAAGCAGTTA360.10068240295335049No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)