FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955722

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955722
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20095
Sequences flagged as poor quality0
Sequence length150-2034
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTACGTATTGCTGGTGCTGAACTAGGCACAGCGAGTCTTGGTTTTAACC1860.9256033839263498No Hit
CAGTTACGTATTGCTGGTGCTGAACTAGGCACAGCGAGTCTTGGTTTTAA1420.7066434436426972No Hit
AGTTACGTATTGCTGGTGCTGAACTAGGCACAGCGAGTCTTGGTTTTAAC590.2936053744712615No Hit
TTTACGTATTGCTGGTGCTGAACTAGGCACAGCGAGTCTTGGTTTTAACC560.27867628763373975No Hit
GTTACGTATTGCTGGTGCTGAACTAGGCACAGCGAGTCTTGGTTTAACCT560.27867628763373975No Hit
CAGTTACGTATTGCTGGTGCTGAACTAGGCACAGCGAGTCTTGGTTTAAC540.26872356307539186No Hit
GCGTTACGTATTGCTGGTGCTGAACTAGGCACAGCGAGTCTTGGTTTTAA440.21895994028365268No Hit
GGTTACGTATTGCTGGTGCTGAACTAGGCACAGCGAGTCTTGGTTTTAAC420.20900721572530478No Hit
GCCATGTATTGCTGGTGCTGAACTAGGCACAGCGAGTCTTGGTTTTAACC390.19407812888778303No Hit
CGTTACGTATTGCTGGTGCTGAACTAGGCACAGCGAGTCTTGGTTTTAAC380.1891017666086091No Hit
CCAGTTACGTATTGCTGGTGCTGAACTAGGCACAGCGAGTCTTGGTTTTA360.17914904205026125No Hit
TGGTTACGTATTGCTGGTGCTGAACTAGGCACAGCGAGTCTTGGTTTTAA320.15924359293356558No Hit
TGCCACGTATTGCTGGTGCTGAACTAGGCACAGCGAGTCTTGGTTTTAAC260.129385419258522No Hit
GGTTACGTATTGCTGGTGCTGAACTAGGCACAGCGAGTCTTGGTTTAACC250.1244090569793481No Hit
AGTTACGTATTGCTGGTGCTGAACTAGGCACAGCGAGTCTTGGTTTAACC230.11445633242100026No Hit
AAAGTTACGTATTGCTGGTGCTGAACTAGGCACAGCGAGTCTTGGTTTTA210.10450360786265239No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)