FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955723

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955723
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47410
Sequences flagged as poor quality0
Sequence length150-4268
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGCCGATCCTTGTGGCTTCTAACTTCTTAA3610.7614427336005062No Hit
GTTACGTATTGCTGGTGCTGCCGATCCTTGTGGCTTCTAACTTCTTAACC1930.4070871124235393No Hit
CCAGTTACGTATTGCTGGTGCTGCCGATCCTTGTGGCTTCTAACTTCTTA890.18772410883779794No Hit
GCGTTACGTATTGCTGGTGCTGCCGATCCTTGTGGCTTCTAACTTCTTAA790.16663151233916895No Hit
CAGTTACGTATTGCTGGTGCTGCCGATCCTTGTGGCTTCTAACTTAACCT770.16241299303944315No Hit
AGTTACGTATTGCTGGTGCTGCCGATCCTTGTGGCTTCTAACTTCTTAAC740.15608521408985446No Hit
CAGTTACGTATTGCTGGTGCCGATCCTTGTGGCTTCTAACTTCTTAACCT550.11600928074245939No Hit
TTTACGTATTGCTGGTGCTGCCGATCCTTGTGGCTTCTAACTTCTTAACC510.1075722421430078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)