FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955725

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955725
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25762
Sequences flagged as poor quality0
Sequence length152-2160
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGCTTGTCCAGGGTTTGTGTAACCTTTTAA1390.5395543824237249No Hit
GTTACGTATTGCTGGTGCTGCTTGTCCAGGGTTTGTGTAACCTTTTAACC1200.4658023445384675No Hit
CAGTTACGTATTGCTGGTGCTGCTTGTCCAGGGTTTGTGTAACCTTTAAC980.3804052480397485No Hit
GTTACGTATTGCTGGTGCTGCTTGTCCAGGGTTTGTGTAACCTTTAACCT930.36099681701731234No Hit
AGTTACGTATTGCTGGTGCTGCTTGTCCAGGGTTTGTGTAACCTTTTAAC540.20961105504231037No Hit
TTTACGTATTGCTGGTGCTGCTTGTCCAGGGTTTGTGTAACCTTTTAACC480.186320937815387No Hit
CCAGTTACGTATTGCTGGTGCTGCTTGTCCAGGGTTTGTGTAACCTTTTA310.1203322723391041No Hit
GCGTTACGTATTGCTGGTGCTGCTTGTCCAGGGTTTGTGTAACCTTTTAA310.1203322723391041No Hit
TGGTTACGTATTGCTGGTGCTGCTTGTCCAGGGTTTGTGTAACCTTTTAA270.10480552752115518No Hit
TTTACGTATTGCTGGTGCTGCTTGTCCAGGGTTTGTGTAACCTTTAACCT260.10092384131666797No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)