FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29429
Sequences flagged as poor quality0
Sequence length150-2196
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGAACGAGTCTCTTGGGACCCATAGATTAA1860.632029630636447No Hit
CAGTTACGTATTGCTGTGCTGAACGAGTCTCTTGGGACCCATAGATTAAC1650.560671446532332No Hit
GTTACGTATTGCTGGTGCTGAACGAGTCTCTTGGGACCCATAGATTAACC810.2752387101158721No Hit
CCAGTTACGTATTGCTGGTGCTGAACGAGTCTCTTGGGACCCATAGATTA570.19368649971116927No Hit
AGTTACGTATTGCTGGTGCTGAACGAGTCTCTTGGGACCCATAGATTAAC510.17329844710999354No Hit
GCGTTACGTATTGCTGGTGCTGAACGAGTCTCTTGGGACCCATAGATTAA510.17329844710999354No Hit
GTTACGTATTGCTGTGCTGAACGAGTCTCTTGGGACCCATAGATTAACCT440.14951238574195522No Hit
CAGTTACGTATTGCTGTGCTGAACGAGTCTCTGGGACCCATAGATTAACC350.11893030684019165No Hit
GCGTTACGTATTGCTGTGCTGAACGAGTCTCTTGGGACCCATAGATTAAC340.11553229807332903No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)