FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004955728

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955728
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11408
Sequences flagged as poor quality0
Sequence length151-2119
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGACTGGTGCAGCTTTGAACATCTAGTTAA1721.5077138849929874No Hit
GTTACGTATTGCTGGTGCTGACTGGTGCAGCTTTGAACATCTAGTTAACC1020.894109396914446No Hit
GCGTTACGTATTGCTGGTGCTGACTGGTGCAGCTTTGAACATCTAGTTAA450.39446002805049085No Hit
TTTACGTATTGCTGGTGCTGACTGGTGCAGCTTTGAACATCTAGTTAACC440.3856942496493688No Hit
AGTTACGTATTGCTGGTGCTGACTGGTGCAGCTTTGAACATCTAGTTAAC430.37692847124824685No Hit
TGGTTACGTATTGCTGGTGCTGACTGGTGCAGCTTTGAACATCTAGTTAA400.3506311360448808No Hit
CCAGTTACGTATTGCTGGTGCTGACTGGTGCAGCTTTGAACATCTAGTTA390.34186535764375875No Hit
GCCATGTATTGCTGGTGCTGACTGGTGCAGCTTTGAACATCTAGTTAACC250.2191444600280505No Hit
AGGTTACGTATTGCTGGTGCTGACTGGTGCAGCTTTGAACATCTAGTTAA220.1928471248246844No Hit
CGTTACGTATTGCTGGTGCTGACTGGTGCAGCTTTGAACATCTAGTTAAC210.18408134642356241No Hit
AAAGTTACGTATTGCTGGTGCTGACTGGTGCAGCTTTGAACATCTAGTTA180.15778401122019636No Hit
TGCCATGTATTGCTGGTGCTGACTGGTGCAGCTTTGAACATCTAGTTAAC170.14901823281907434No Hit
GGTTACGTATTGCTGGTGCTGACTGGTGCAGCTTTGAACATCTAGTTAAC170.14901823281907434No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)