FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004955729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12995
Sequences flagged as poor quality0
Sequence length151-2050
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGAGTAGAAAGGGTTCCTTCCCACTCTTAA680.5232781839168911No Hit
GTTACGTATTGCTGGTGCTGAGTAGAAAGGGTTCCTTCCCACTCTTAACC360.2770296267795306No Hit
CCAGTTACGTATTGCTGGTGCTGAGTAGAAAGGGTTCCTTCCCACTCTTA270.20777222008464794No Hit
CAGTTACGTATTGCTGGTGCTGAGTAGAAAGGGTTCCTTCCACTCTTAAC220.16929588303193538No Hit
CAGTTACGTATTGCTGGTGCTGAGTAGAAAGGTTCCTTCCCACTCTTAAC210.16160061562139283No Hit
CAGTTACGTATTGCTGGTGCTGAGTAGAAGGGTTCCTTCCCACTCTTAAC190.1462100808003078No Hit
GTTACGTATTGCTGGTGCTGAGTAGAAGGGTTCCTTCCCACTCTTAACCT150.11542901115813775No Hit
GCGTTACGTATTGCTGGTGCTGAGTAGAAAGGGTTCCTTCCCACTCTTAA150.11542901115813775No Hit
TGGTTACGTATTGCTGGTGCTGAGTAGAAAGGGTTCCTTCCCACTCTTAA150.11542901115813775No Hit
AGTTACGTATTGCTGGTGCTGAGTAGAAAGGGTTCCTTCCCACTCTTAAC150.11542901115813775No Hit
GTTACGTATTGCTGGTGCTGAGTAGAAAGGGTTCCTTCCACTCTTAACCT140.10773374374759521No Hit
GTTACGTATTGCTGGTGCTGAGTAGAAAGGTTCCTTCCCACTCTTAACCT130.10003847633705272No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)