FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51568
Sequences flagged as poor quality0
Sequence length150-2040
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGCCTGTCTGGAAGAAGAATGGACTTTTAA4410.8551815079118834No Hit
CAGTTACGTATTGCTGGTGCTGCCTGTCTGGAAGAAGAATGGACTTTAAC2970.575938566552901No Hit
GTTACGTATTGCTGGTGCTGCCTGTCTGGAAGAAGAATGGACTTTTAACC2040.3955941669252249No Hit
GTTACGTATTGCTGGTGCTGCCTGTCTGGAAGAAGAATGGACTTTAACCT1360.26372944461681663No Hit
AGTTACGTATTGCTGGTGCTGCCTGTCTGGAAGAAGAATGGACTTTTAAC1170.22688488985417316No Hit
TTTACGTATTGCTGGTGCTGCCTGTCTGGAAGAAGAATGGACTTTTAACC970.1881011479987589No Hit
GCGTTACGTATTGCTGGTGCTGCCTGTCTGGAAGAAGAATGGACTTTTAA910.17646602544213466No Hit
CCAGTTACGTATTGCTGGTGCTGCCTGTCTGGAAGAAGAATGGACTTTTA910.17646602544213466No Hit
TGGTTACGTATTGCTGGTGCTGCCTGTCTGGAAGAAGAATGGACTTTTAA790.15319578032888612No Hit
CCAGTTACGTATTGCTGGTGCTGCCTGTCTGGAAGAAGAATGGACTTTAA740.14349984486503256No Hit
TGGTTACGTATTGCTGGTGCTGCCTGTCTGGAAGAAGAATGGACTTTAAC730.14156065777226187No Hit
AGTTACGTATTGCTGGTGCTGCCTGTCTGGAAGAAGAATGGACTTTAACC730.14156065777226187No Hit
CAGTTACGTATTGCTGGTGCTGCCTGTCTGGAAGAATGGACTTTTAACCT650.1260471610300962No Hit
TGCCATGTATTGCTGGTGCTGCCTGTCTGGAAGAAGAATGGACTTTTAAC640.12410797393732546No Hit
TTTACGTATTGCTGGTGCTGCCTGTCTGGAAGAAGAATGGACTTTAACCT640.12410797393732546No Hit
GCGTTACGTATTGCTGGTGCTGCCTGTCTGGAAGAAGAATGGACTTTAAC600.11635122556624264No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)