FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20851
Sequences flagged as poor quality0
Sequence length150-2387
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGGTAGTGGACCTAGAACCTGTGCCATTAA3731.7888830271929403No Hit
GTTACGTATTGCTGGTGCTGGTAGTGGACCTAGAACCTGTGCCATTAACC2080.9975540741451249No Hit
GCGTTACGTATTGCTGGTGCTGGTAGTGGACCTAGAACCTGTGCCATTAA1200.5755119658529567No Hit
CCAGTTACGTATTGCTGGTGCTGGTAGTGGACCTAGAACCTGTGCCATTA1090.5227567023164357No Hit
AGTTACGTATTGCTGGTGCTGGTAGTGGACCTAGAACCTGTGCCATTAAC910.43642990743849214No Hit
TGGTTACGTATTGCTGGTGCTGGTAGTGGACCTAGAACCTGTGCCATTAA620.2973478490240276No Hit
TTTACGTATTGCTGGTGCTGGTAGTGGACCTAGAACCTGTGCCATTAACC600.28775598292647836No Hit
CGTTACGTATTGCTGGTGCTGGTAGTGGACCTAGAACCTGTGCCATTAAC520.24938851853628122No Hit
GGTTACGTATTGCTGGTGCTGGTAGTGGACCTAGAACCTGTGCCATTAAC440.21102105414608413No Hit
AGGTTACGTATTGCTGGTGCTGGTAGTGGACCTAGAACCTGTGCCATTAA410.1966332549997602No Hit
TGCCACGTATTGCTGGTGCTGGTAGTGGACCTAGAACCTGTGCCATTAAC350.1678576567071124No Hit
TAAGTTACGTATTGCTGGTGCTGGTAGTGGACCTAGAACCTGTGCCATTA290.13908205841446453No Hit
AAAGTTACGTATTGCTGGTGCTGGTAGTGGACCTAGAACCTGTGCCATTA260.12469425926814061No Hit
TGCCATGTATTGCTGGTGCTGGTAGTGGACCTAGAACCTGTGCCATTAAC250.11989832621936598No Hit
CGGTTACGTATTGCTGGTGCTGGTAGTGGACCTAGAACCTGTGCCATTAA250.11989832621936598No Hit
CAGTTACGTATTGCTGGTGCTGGTGGACCTAGAACCTGTGCCATTAACCT230.1103064601218167No Hit
GCCATGTATTGCTGGTGCTGGTAGTGGACCTAGAACCTGTGCCATTAACC210.10071459402426741No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)