FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955736

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955736
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32840
Sequences flagged as poor quality0
Sequence length150-2177
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCTATTAAC2460.7490864799025578No Hit
CAGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCCTATTAA1690.5146163215590743No Hit
GTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCCTATTAACC1500.45676004872107184No Hit
GTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCTATTAACCT1480.45066991473812423No Hit
AGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCTATTAACC700.21315468940316687No Hit
TTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCTATTAACCT670.20401948842874545No Hit
CCAGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCTATTAA610.18574908647990257No Hit
GCGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCTATTAAC580.17661388550548113No Hit
AGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCCTATTAAC460.14007308160779536No Hit
GCGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCCTATTAA430.13093788063337392No Hit
CCAGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCCTATTA410.12484774665042632No Hit
CAGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCTATTAACC410.12484774665042632No Hit
TTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCCTATTAACC360.10962241169305724No Hit
CGTTACGTATTGCTGGTGCTGTTCGGATTCTATCGTGTTTCCCTATTAAC340.10353227771010962No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)