FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955739

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955739
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33052
Sequences flagged as poor quality0
Sequence length150-1922
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGCCACAGTGTCAACTAGAGCCTCTCTTAA2860.8653031586590827No Hit
CAGTTACGTATTGCTGGTGCTGCCACAGTGTCAACTAGAGCCTCTTAACC1540.46593247004719834No Hit
GTTACGTATTGCTGGTGCTGCCACAGTGTCAACTAGAGCCTCTCTTAACC1540.46593247004719834No Hit
CCAGTTACGTATTGCTGGTGCTGCCACAGTGTCAACTAGAGCCTCTCTTA1050.3176812295776352No Hit
TGGTTACGTATTGCTGGTGCTGCCACAGTGTCAACTAGAGCCTCTCTTAA770.23296623502359917No Hit
AGTTACGTATTGCTGGTGCTGCCACAGTGTCAACTAGAGCCTCTCTTAAC750.22691516398402517No Hit
GCGTTACGTATTGCTGGTGCTGCCACAGTGTCAACTAGAGCCTCTCTTAA590.17850659566743313No Hit
GTTACGTATTGCTGGTGCTGCCACAGTGTCAACTAGAGCCTCTTAACCTT550.16640445358828512No Hit
GGTTACGTATTGCTGGTGCTGCCACAGTGTCAACTAGAGCCTCTCTTAAC530.16035338254871112No Hit
CGTTACGTATTGCTGGTGCTGCCACAGTGTCAACTAGAGCCTCTCTTAAC410.1240469563112671No Hit
TGGTTACGTATTGCTGGTGCTGCCACAGTGTCAACTAGAGCCTCTTAACC410.1240469563112671No Hit
AGGTTACGTATTGCTGGTGCTGCCACAGTGTCAACTAGAGCCTCTCTTAA390.1179958852716931No Hit
TTTACGTATTGCTGGTGCTGCCACAGTGTCAACTAGAGCCTCTCTTAACC370.11194481423211909No Hit
CCAGTTACGTATTGCTGGTGCTGCCACAGTGTCAACTAGAGCCTCTTAAC350.10589374319254508No Hit
CAGTTACGTATTGCTGGTGCTGCCAGTGTCAACTAGAGCCTCTCTTAACC340.10286820767275809No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)