FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955740

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955740
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21138
Sequences flagged as poor quality0
Sequence length150-2088
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGAACGGAGGAGTTAGTTGGATGATCTTAA3791.792979468256221No Hit
GTTACGTATTGCTGGTGCTGAACGGAGGAGTTAGTTGGATGATCTTAACC1490.7048916643012584No Hit
CCAGTTACGTATTGCTGGTGCTGAACGGAGGAGTTAGTTGGATGATCTTA770.3642728734979657No Hit
AGTTACGTATTGCTGGTGCTGAACGGAGGAGTTAGTTGGATGATCTTAAC690.3264263411864888No Hit
GCGTTACGTATTGCTGGTGCTGAACGGAGGAGTTAGTTGGATGATCTTAA620.2933106254139465No Hit
CAGTTACGTATTGCTGGTGCTGAACGGAGAGTTAGTTGGATGATCTTAAC430.20342511117418866No Hit
CAGTTACGTATTGCTGGTGCTGAACGGAGGAGTTAGTTGATGATCTTAAC420.19869429463525404No Hit
TGGTTACGTATTGCTGGTGCTGAACGGAGGAGTTAGTTGGATGATCTTAA400.1892326615573848No Hit
GGTTACGTATTGCTGGTGCTGAACGGAGGAGTTAGTTGGATGATCTTAAC300.1419244961680386No Hit
TTTACGTATTGCTGGTGCTGAACGGAGGAGTTAGTTGGATGATCTTAACC290.13719367962910398No Hit
AAAGTTACGTATTGCTGGTGCTGAACGGAGGAGTTAGTTGGATGATCTTA280.13246286309016939No Hit
CGTTACGTATTGCTGGTGCTGAACGGAGGAGTTAGTTGGATGATCTTAAC250.11827041347336549No Hit
TGCCACGTATTGCTGGTGCTGAACGGAGGAGTTAGTTGGATGATCTTAAC250.11827041347336549No Hit
CAGTTACGTATTGCTGGTGCTGAACGGAGGAGTTAGTGGATGATCTTAAC240.11353959693443089No Hit
TAAGTTACGTATTGCTGGTGCTGAACGGAGGAGTTAGTTGGATGATCTTA220.10407796385656164No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)