FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004955743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9020
Sequences flagged as poor quality0
Sequence length150-2606
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTACGTATTGCTGGTGCTGACCACTGCCATGTATCAAAGTACGTTAACC1041.1529933481152994No Hit
CAGTTACGTATTGCTGGTGCTGACCACTGCCATGTATCAAAGTACGTTAA740.8203991130820398No Hit
TTTACGTATTGCTGGTGCTGACCACTGCCATGTATCAAAGTACGTTAACC470.5210643015521065No Hit
AGTTACGTATTGCTGGTGCTGACCACTGCCATGTATCAAAGTACGTTAAC280.31042128603104213No Hit
GCCATGTATTGCTGGTGCTGACCACTGCCATGTATCAAAGTACGTTAACC260.28824833702882485No Hit
CCAGTTACGTATTGCTGGTGCTGACCACTGCCATGTATCAAAGTACGTTA240.2660753880266075No Hit
GCGTTACGTATTGCTGGTGCTGACCACTGCCATGTATCAAAGTACGTTAA220.24390243902439024No Hit
TGCCATGTATTGCTGGTGCTGACCACTGCCATGTATCAAAGTACGTTAAC210.23281596452328163No Hit
GGTTACGTATTGCTGGTGCTGACCACTGCCATGTATCAAAGTACGTTAAC190.21064301552106432No Hit
CGTTACGTATTGCTGGTGCTGACCACTGCCATGTATCAAAGTACGTTAAC180.19955654101995565No Hit
TGGTTACGTATTGCTGGTGCTGACCACTGCCATGTATCAAAGTACGTTAA160.17738359201773835No Hit
TGCCATGCATTGCTGGTGCTGACCACTGCCATGTATCAAAGTACGTTAAC130.14412416851441243No Hit
CAGTTACGTATTGCTGGTGCTGACCACTGCCATGTATCAAAAGTACGTTA110.12195121951219512No Hit
CTTTACGTATTGCTGGTGCTGACCACTGCCATGTATCAAAGTACGTTAAC100.11086474501108648No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)