FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35920
Sequences flagged as poor quality0
Sequence length150-2042
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGCCAGTAGAAGTCCGACAACGTCATTTAA4911.3669265033407572No Hit
GTTACGTATTGCTGGTGCTGCCAGTAGAAGTCCGACAACGTCATTTAACC2620.7293986636971047No Hit
GCGTTACGTATTGCTGGTGCTGCCAGTAGAAGTCCGACAACGTCATTTAA2290.6375278396436526No Hit
CCAGTTACGTATTGCTGGTGCTGCCAGTAGAAGTCCGACAACGTCATTTA1940.5400890868596883No Hit
TGGTTACGTATTGCTGGTGCTGCCAGTAGAAGTCCGACAACGTCATTTAA1180.3285077951002227No Hit
AGTTACGTATTGCTGGTGCTGCCAGTAGAAGTCCGACAACGTCATTTAAC1070.2978841870824053No Hit
CGTTACGTATTGCTGGTGCTGCCAGTAGAAGTCCGACAACGTCATTTAAC870.24220489977728282No Hit
CGGTTACGTATTGCTGGTGCTGCCAGTAGAAGTCCGACAACGTCATTTAA760.21158129175946547No Hit
TTTACGTATTGCTGGTGCTGCCAGTAGAAGTCCGACAACGTCATTTAACC750.20879732739420936No Hit
GGTTACGTATTGCTGGTGCTGCCAGTAGAAGTCCGACAACGTCATTTAAC730.2032293986636971No Hit
AGGTTACGTATTGCTGGTGCTGCCAGTAGAAGTCCGACAACGTCATTTAA620.17260579064587975No Hit
TGCCATGTATTGCTGGTGCTGCCAGTAGAAGTCCGACAACGTCATTTAAC570.1586859688195991No Hit
CAGTTACGTATTGCTGGTGCCAGTAGAAGTCCGACAACGTCATTTAACCT490.13641425389755013No Hit
TAAGTTACGTATTGCTGGTGCTGCCAGTAGAAGTCCGACAACGTCATTTA480.13363028953229397No Hit
AAAGTTACGTATTGCTGGTGCTGCCAGTAGAAGTCCGACAACGTCATTTA470.13084632516703787No Hit
CAAGTTACGTATTGCTGGTGCTGCCAGTAGAAGTCCGACAACGTCATTTA430.11971046770601337No Hit
GCCATGTATTGCTGGTGCTGCCAGTAGAAGTCCGACAACGTCATTTAACC400.11135857461024498No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)