FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004955747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16581
Sequences flagged as poor quality0
Sequence length150-2129
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGTGAGAGACAAGATTGTTCGTGGACTTAA2391.4414088414450275No Hit
GTTACGTATTGCTGGTGCTGTGAGAGACAAGATTGTTCGTGGACTTAACC920.5548519389662867No Hit
CAGTTACGTATTGCTGGTGCTGTGAGACAAGATTGTTCGTGGACTTAACC900.5427899402931066No Hit
CCAGTTACGTATTGCTGGTGCTGTGAGAGACAAGATTGTTCGTGGACTTA770.46438694891743565No Hit
AGTTACGTATTGCTGGTGCTGTGAGAGACAAGATTGTTCGTGGACTTAAC480.2894879681563235No Hit
GCGTTACGTATTGCTGGTGCTGTGAGAGACAAGATTGTTCGTGGACTTAA400.2412399734636029No Hit
TGGTTACGTATTGCTGGTGCTGTGAGAGACAAGATTGTTCGTGGACTTAA400.2412399734636029No Hit
CAGTTACGTATTGCTGGTGCTGAGAGACAAGATTGTTCGTGGACTTAACC330.1990229781074724No Hit
GGTTACGTATTGCTGGTGCTGTGAGAGACAAGATTGTTCGTGGACTTAAC280.16886798142452206No Hit
TTTACGTATTGCTGGTGCTGTGAGAGACAAGATTGTTCGTGGACTTAACC260.1568059827513419No Hit
CCAGTTACGTATTGCTGGTGCTGTGAGACAAGATTGTTCGTGGACTTAAC230.13871298474157168No Hit
GTTACGTATTGCTGGTGCTGTGAGACAAGATTGTTCGTGGACTTAACCTT210.12665098606839154No Hit
AAAGTTACGTATTGCTGGTGCTGTGAGAGACAAGATTGTTCGTGGACTTA200.12061998673180145No Hit
TAAGTTACGTATTGCTGGTGCTGTGAGAGACAAGATTGTTCGTGGACTTA190.11458898739521138No Hit
AGTTACGTATTGCTGGTGCTGTGAGACAAGATTGTTCGTGGACTTAACCT190.11458898739521138No Hit
CAAGTTACGTATTGCTGGTGCTGTGAGAGACAAGATTGTTCGTGGACTTA170.10252698872203125No Hit
GCGTTACGTATTGCTGGTGCTGTGAGACAAGATTGTTCGTGGACTTAACC170.10252698872203125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)