FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955752

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955752
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17982
Sequences flagged as poor quality0
Sequence length150-2866
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGCCTCATCTTGTGAAGTTGTTTCGGTTAA2421.3457902346791235No Hit
GTTACGTATTGCTGGTGCTGCCTCATCTTGTGAAGTTGTTTCGGTTAACC880.4893782671560449No Hit
CCAGTTACGTATTGCTGGTGCTGCCTCATCTTGTGAAGTTGTTTCGGTTA670.37259481703926145No Hit
AGTTACGTATTGCTGGTGCTGCCTCATCTTGTGAAGTTGTTTCGGTTAAC560.31142253364475586No Hit
GCGTTACGTATTGCTGGTGCTGCCTCATCTTGTGAAGTTGTTTCGGTTAA400.22244466688911133No Hit
TTTACGTATTGCTGGTGCTGCCTCATCTTGTGAAGTTGTTTCGGTTAACC380.21132243354465577No Hit
CAGTTACGTATTGCTGGTGCCTCATCTTGTGAAGTTGTTTCGGTTAACCT290.1612723834946057No Hit
TGGTTACGTATTGCTGGTGCTGCCTCATCTTGTGAAGTTGTTTCGGTTAA280.15571126682237793No Hit
CAGTTACGTATTGCTGGTGCTGCCTCATCTTGTAGTTGTTTCGGTTAACC260.14458903347792237No Hit
AGGTTACGTATTGCTGGTGCTGCCTCATCTTGTGAAGTTGTTTCGGTTAA240.13346680013346682No Hit
TAAGTTACGTATTGCTGGTGCTGCCTCATCTTGTGAAGTTGTTTCGGTTA230.12790568346123904No Hit
ATAGTTACGTATTGCTGGTGCTGCCTCATCTTGTGAAGTTGTTTCGGTTA180.10010010010010009No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)