FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004955753

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955753
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10882
Sequences flagged as poor quality0
Sequence length150-1847
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGGCTAGGTCAATCTCCTTCGGAAGTTTAA1431.314096673405624No Hit
GTTACGTATTGCTGGTGCTGGCTAGGTCAATCTCCTTCGGAAGTTTAACC500.45947436133063774No Hit
CCAGTTACGTATTGCTGGTGCTGGCTAGGTCAATCTCCTTCGGAAGTTTA380.3492005146112847No Hit
AGTTACGTATTGCTGGTGCTGGCTAGGTCAATCTCCTTCGGAAGTTTAAC290.2664951295717699No Hit
GCGTTACGTATTGCTGGTGCTGGCTAGGTCAATCTCCTTCGGAAGTTTAA220.2021687189854806No Hit
TGGTTACGTATTGCTGGTGCTGGCTAGGTCAATCTCCTTCGGAAGTTTAA200.1837897445322551No Hit
GGTTACGTATTGCTGGTGCTGGCTAGGTCAATCTCCTTCGGAAGTTTAAC170.15622128285241685No Hit
CAGTTACGTATTGCTGGTGCTGGCTAGGTCAATCCTTCGGAAGTTTAACC160.14703179562580407No Hit
AAAGTTACGTATTGCTGGTGCTGGCTAGGTCAATCTCCTTCGGAAGTTTA140.12865282117257856No Hit
CAGTTACGTATTGCTGGTGCTGGCTAGGTCAATCTCTTCGGAAGTTTAAC130.11946333394596581No Hit
TGCCATGTATTGCTGGTGCTGGCTAGGTCAATCTCCTTCGGAAGTTTAAC120.11027384671935306No Hit
CAGTTACGTATTGCTGGTGCTGGCTAGGTCAATCTCCTTCGAAGTTTAAC120.11027384671935306No Hit
TTTACGTATTGCTGGTGCTGGCTAGGTCAATCTCCTTCGGAAGTTTAACC120.11027384671935306No Hit
CAGTTACGTATTGCTGGTGCTGGCTAGGTCAATCTCCTTCGGAGTTTAAC110.1010843594927403No Hit
AGGTTACGTATTGCTGGTGCTGGCTAGGTCAATCTCCTTCGGAAGTTTAA110.1010843594927403No Hit
TAAGTTACGTATTGCTGGTGCTGGCTAGGTCAATCTCCTTCGGAAGTTTA110.1010843594927403No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)