FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43348
Sequences flagged as poor quality0
Sequence length150-2331
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGTAGTTTGGATGACCAAGGATAGCCTTAA8291.9124296391990405No Hit
GTTACGTATTGCTGGTGCTGTAGTTTGGATGACCAAGGATAGCCTTAACC2770.6390144874042633No Hit
CCAGTTACGTATTGCTGGTGCTGTAGTTTGGATGACCAAGGATAGCCTTA2030.46830303589554306No Hit
GCGTTACGTATTGCTGGTGCTGTAGTTTGGATGACCAAGGATAGCCTTAA1460.3368090800036911No Hit
AGTTACGTATTGCTGGTGCTGTAGTTTGGATGACCAAGGATAGCCTTAAC1450.33450216849681647No Hit
TGGTTACGTATTGCTGGTGCTGTAGTTTGGATGACCAAGGATAGCCTTAA1390.3206606994555689No Hit
TAAGTTACGTATTGCTGGTGCTGTAGTTTGGATGACCAAGGATAGCCTTA940.21684968164621204No Hit
CAGTTACGTATTGCTGGTGCTGTAGTTTGATGACCAAGGATAGCCTTAAC880.20300821260496446No Hit
TTTACGTATTGCTGGTGCTGTAGTTTGGATGACCAAGGATAGCCTTAACC870.20070130109808987No Hit
CAGTTACGTATTGCTGGTGCTGTAGTTTGGATGACCAGGATAGCCTTAAC700.16148380548122174No Hit
AAAGTTACGTATTGCTGGTGCTGTAGTTTGGATGACCAAGGATAGCCTTA640.14764233643997415No Hit
CGTTACGTATTGCTGGTGCTGTAGTTTGGATGACCAAGGATAGCCTTAAC610.14072160191935038No Hit
GGTTACGTATTGCTGGTGCTGTAGTTTGGATGACCAAGGATAGCCTTAAC560.12918704438497738No Hit
AGGTTACGTATTGCTGGTGCTGTAGTTTGGATGACCAAGGATAGCCTTAA550.1268801328781028No Hit
CAGTTACGTATTGCTGGTGCTGGTTTGGATGACCAAGGATAGCCTTAACC500.1153455753437298No Hit
ATAGTTACGTATTGCTGGTGCTGTAGTTTGGATGACCAAGGATAGCCTTA470.10842484082310602No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)