FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955755

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955755
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45905
Sequences flagged as poor quality0
Sequence length150-2331
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGCTACTTACGAAGCTGAGGGACTGCTTAA3290.7166975275024507No Hit
CAGTTACGTATTGCTGGTGCTGCTACTTACGAAGCTGAGGACTGCTTAAC1340.2919071996514541No Hit
GTTACGTATTGCTGGTGCTGCTACTTACGAAGCTGAGGGACTGCTTAACC1320.2875503757760593No Hit
CCAGTTACGTATTGCTGGTGCTGCTACTTACGAAGCTGAGGGACTGCTTA1000.21784119376974187No Hit
AGTTACGTATTGCTGGTGCTGCTACTTACGAAGCTGAGGGACTGCTTAAC660.14377518788802965No Hit
GCGTTACGTATTGCTGGTGCTGCTACTTACGAAGCTGAGGGACTGCTTAA590.12852630432414772No Hit
GTTACGTATTGCTGGTGCTGCTACTTACGAAGCTGAGGACTGCTTAACCT580.12634789238645028No Hit
TGGTTACGTATTGCTGGTGCTGCTACTTACGAAGCTGAGGGACTGCTTAA540.1176342446356606No Hit
CAGTTACGTATTGCTGGTGCTACTTACGAAGCTGAGGGACTGCTTAACCT460.10020694913408126No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)